Category Archives: WORLD

Largest Human Family Tree Identifies Nearly 27 Million Ancestors

Largest Human Family Tree Identifies Nearly 27 Million Ancestors

A team of scientists has combined modern and ancient genomes to build a new “genealogy of everyone,” in an achievement that sets the groundwork for future studies into our evolution and global spread.

A visualization showing the inferred human ancestral lineages over time and geographical location. Each line represents an ancestral relationship; the line’s width shows the frequency of the relationship. Colour indicates the estimated age of the ancestor. Image: Reproduced, with permission, from Wohns et al., A unified genealogy of modern and ancient genomes. Science (2022).

Thousands upon thousands of modern and ancient human genomes have been integrated into a coherent and unified genealogy, according to new research published in Science. It’s akin to a family tree, but it’s a whopper, as it contains nearly 27 million ancestors, making it the largest human genealogy ever created. The new map could be used to study human evolution and even assist with medical research having to do with hereditary diseases.

‘We have basically built a huge family tree, a genealogy for all of humanity that models as exactly as we can the history that generated all the genetic variation we find in humans today,” Yan Wong, an evolutionary geneticist at the Big Data Institute and a co-author of the study, explained in a University of Oxford statement. “This genealogy allows us to see how every person’s genetic sequence relates to every other, along with all the points of the genome.”

The network shows how individuals around the world are related to each other, and it predicts common ancestors, including when they lived and where they came from. It also models key events in human history, such as human migrations out of Africa and dispersals to other parts of the globe.

Researchers have been collecting human genomes for years, but the challenge has been in making sense of it all from a larger, holistic perspective.

Comparisons of these genomes have been difficult owing to disparate methods of gathering the data, the presence of multiple databases, and variances in terms of data quality and analysis. To compound the problem, each human genome contains segments from multiple ancestries, whether from various ethnic groups or different human populations altogether, such as Neanderthals and Denisovans.

These ancestries also exist across vast timescales, which represents yet another challenge. What’s needed are algorithms that can accommodate these challenges, and that’s exactly what the researchers are claiming to have achieved.

To create the map, Wong, with his colleagues, applied a “non-parametric tree-recording method” to modern and ancient human genomes, the oldest of which date back hundreds of thousands of years. I reached out to Sharon Browning, a biostatistician at the University of Washington who wasn’t involved in the research, to get her to take on the achievement.

“This paper is primarily about a great new tool for genetic studies called tskit, which is short for ‘tree sequence kit’,” explained Browning in an email. It’s called a tree because, “if you consider one small part of the genome in a number of individuals, and trace back the descent, eventually you get back to a single ancestor, like ‘mitochondrial Eve’ for the mitochondrial genome,” she said.

“That single ancestor is the root of the tree, and the set of individuals that you were considering are the tips of the branches of the tree.” Browning said the tree looks different along with different parts of the genome because of recombination (when the exchanging of genetic material results in variation), and that tskit is “used to infer the trees along the sequenced genome.”

Largest Human Family Tree Identifies Nearly 27 Million Ancestors
A reconstruction of the face of a Neanderthal at the National Museum of Antiquities in Leiden, Netherlands.

Indeed, the algorithms work by predicting where common ancestors must be present in the evolutionary family tree, by looking at genetic variation. And because the genomes are geotagged, it predicts where these common ancestors lived.

“Essentially, we are reconstructing the genomes of our ancestors and using them to form a vast network of relationships,” Anthony Wilder Wohns, the lead author of the study and a researcher at the Big Data Institute, said in the Oxford release.

“We can then estimate when and where these ancestors lived. The power of our approach is that it makes very few assumptions about the underlying data and can also include both modern and ancient DNA samples.”

Browning said an earlier version of tskit showed promise, but it turned out to have significant limitations. The researchers have now addressed the limitations, “providing a tool that should be extremely useful across many different types of study,” she said. To which she added: “Although the authors provide a couple of applications, including their cool visualization of where human ancestors came from, the scope of possible applications is very large, and I would expect to see a flurry of activity from researchers developing these.”

Browning cautioned that the trees estimated by tskit “don’t come with uncertainty measures,” so she expects the results will be useful for positing new hypotheses, rather than for proving hypotheses. “Other more specialized methods will still be needed for verification purposes,” she said.

Looking ahead, the team hopes to add new genetic information to the system as it arrives. They don’t expect this to be a problem, as the system can accommodate millions more.

Ruins of an ancient temple for Zeus unearthed in Egypt’s Sinai

Ruins of an ancient temple for Zeus unearthed in Egypt’s Sinai

Egyptian archaeologists unearthed the ruins of a temple for the ancient Greek god Zeus in the Sinai Peninsula, antiquities authorities said Monday. The Tourism and Antiquities Ministry said in a statement the temple ruins were found in the Tell el-Farma archaeological site in northwestern Sinai.

Ruins of an ancient temple for Zeus unearthed in Egypt's Sinai
Archaeologists work in the ruins of a temple for Zeus-Kasios, the ancient Greek god, at the Tell el-Farma archaeological site in the northwestern corner of the Sinai Peninsula. Tell el-Farma, also known by its ancient name Pelusium, dates back to the late Pharaonic period and was also used during Greco-Roman and Byzantine times.

Tell el-Farma, also known by its ancient name Pelusium, dates back to the late Pharaonic period and was also used during Greco-Roman and Byzantine times.

There are also remains dating to the Christian and early Islamic periods.

Archaeologists work at the Tell el-Farma archaeological site.

Mostafa Waziri, secretary-general of Egypt’s Supreme Council of Antiquities, said archaeologists excavated the temple ruins through its entrance gate, where two huge fallen granite columns were visible. The gate was destroyed in a powerful earthquake in ancient times, he said.

Waziri said the ruins were found between the Pelusium Fort and a memorial church at the site. Archaeologists found a set of granite blocks probably used to build a staircase for worshipers to reach the temple.

Excavations at the area date back to early 1900 when French Egyptologist Jean Clédat found ancient Greek inscriptions that showed the existence of the Zeus-Kasios temple but he didn’t unearth it, according to the ministry.

Tell el-Farma, also known by its ancient name Pelusium, dates back to the late Pharaonic period and was also used during Greco-Roman and Byzantine times.

Zeus-Kasios is a conflation of Zeus, the God of the sky in ancient Greek mythology, and Mount Kasios in Syria, where Zeus once worshipped.

Hisham Hussein, the director of Sinai archaeological sites, said inscriptions found in the area show that Roman Emperor Hadrian (117-138) renovated the temple.

He said experts will study the unearthed blocks and do a photogrammetry survey to help determine the architectural design of the temple.

The temple ruins are the latest in a series of ancient discoveries Egypt has touted in the past couple of years in the hope of attracting more tourists.

The tourism industry has been reeling from the political turmoil following the 2011 popular uprising that toppled longtime autocrat Hosni Mubarak. The sector was also dealt further blows by the coronavirus pandemic and most recently Russia’s invasion of Ukraine.

Ancient skeletons reveal the history of worm parasites in Britain

Ancient skeletons reveal the history of worm parasites in Britain

Britons have suffered from worms since the Bronze Age, new research shows, with parasite infections peaking during the Roman and Late Medieval periods.

Things began to get better during the Industrial period, in part thanks to improvements in hygiene in parts of the UK, before the Victorian ‘Sanitary Revolution’ ushered in a nationwide reduction in infections.

Oxford researchers analysed ancient skeletons in an effort to establish the size and scale of parasitic worm infections in the UK over the course of history.

They hope that understanding how parasitic worm infections changed in the past, it could help public health measures in regions of the world still experiencing problems today. 

Infections with parasitic worms are a big problem in some tropical and sub-tropical regions of the world. 

Ancient skeletons reveal the history of worm parasites in Britain
Britons have suffered from worms since the Bronze Age, new research shows. Pictured, fish tapeworm eggs unearthed in a previous study into Bronze Age Britons in The Fens in Cambridgeshire
The Bronze Age settlement at Must Farm in Cambridgeshire consisted of wooden houses built on stilts above the water. They believe the parasites were caught because the villagers foraged for food in the stagnant lakes and waterways around their homes

But in the past, they were much more widespread and were common throughout Europe.

The research team looked for worm eggs in the soil from the region where the infected intestines of 464 human skeletons would have been, at 17 sites dating from the Bronze Age to the Industrial Revolution.

They found that worm infections peaked in Britain during the Roman and Late Medieval periods when infection rates were similar to those seen in the most affected regions today.

Things changed in the Industrial period. Worm infection rates differed a lot between different sites – some sites had little evidence of infection, while in others there was a lot of infection.

The researchers think that local changes in sanitation and hygiene may have reduced infection in some areas before nationwide changes during the Victorian ‘Sanitary Revolution’.

The co-first authors, Hannah Ryan and Patrik Flammer said: ‘Defining the patterns of infection with intestinal worms can help us to understand the health, diet and habits of past populations. 

‘More than that, defining the factors that led to changes in infection levels (without modern drugs) can provide support for approaches to control these infections in modern populations.’

Britons have suffered from worms since the Bronze Age, new research shows. Pictured, a human whipworm

Humans are infected with roundworms and whipworms through contamination by faecal matter and catch some tapeworms by eating raw or undercooked meat or fish. 

The team will next use their array of parasite-based approaches to investigate other infections in the past. This includes more large-scale analyses of human burials, as well as continuing their ancient DNA work.

Their ambition is to employ a multidisciplinary approach, working closely with archaeologists, historians, parasitologists, biologists and other interested groups to use parasites to help understand the past.

The study has been published in the journal PLoS Neglected Tropical Diseases.

Clues to Pacific Migration Paths Discovered in Papua New Guinea

Clues to Pacific Migration Paths Discovered in Papua New Guinea

Scientists think they may have found the smoking gun that explains why humans colonised the thousands of scattered islands of the South Pacific – and it lies in a sherd of pottery found hidden on a small island in Papua New Guinea.

Clues to Pacific Migration Paths Discovered in Papua New Guinea
Papua New Guinea was a launching point for the population of the Pacific Islands 3,000 years ago.

The peopling of the Pacific islands is one of humanity’s most epic migration stories. In just three millennia, an ancestral cultural group called the Lapita spanned a third of the Earth’s surface, reaching some of the most isolated landmasses on the planet.

As they moved, these ancestral Pacific Islanders are thought to have brought with them Austronesian languages, new domestic animals species like pigs, dogs and chickens, and a distinctive kind of pottery.

“For a long time it was thought Lapita groups avoided most of Papua New Guinea because people were already living there,” says Ben Shaw, lead researcher of the new study published today in Nature Ecology and Evolution. But, as this new research shows, that wasn’t always the case.

Brooker Island is a small finger of land that juts out into the sea near the southern tip of Papua New Guinea, an early step in the chain of islands that makes up the South Pacific. 

The Gutunka archaeological site nestles in a north-facing bay at the edge of an epic lagoon on the island that is, according to researchers, one of the most biodiverse marine ecosystems in the world.

Painstakingly excavated in 2018 and 2019, the earliest layers of the site contained the bones of a menagerie of introduced species, including pigs and dogs, and rats. As described in a new study in Nature Ecology and Evolution, later layers revealed a rich complex of pottery and tools unique to the Lapita culture, including foreign-source obsidian, blades consistent with tattooing, and the distinctive pots. 

The researchers believe the Lapita people may have initially arrived as sporadic, occasional visitors, before establishing a more permanent base in the bay, as evidenced by a more complex material culture and the more intensive harvesting of sea turtles for food. 

“Lapita cultural groups were the first people to reach the remote Pacific islands such as Vanuatu around 3,000 years ago,” says Shaw. “But in Papua New Guinea, where people have lived for at least 50,000 years, the timing and extent of Lapita dispersals are poorly understood.”

Shaw says the new discovery explains why the Lapita people colonised the Pacific islands 3,000 years ago: he suggests that contact with Indigenous people on PNG may have influenced migration pathways and led to island-hopping, as populations met, interacted and possibly butted heads.

“It is one of the greatest migrations in human history and finally we have evidence to help explain why the migration might have occurred and why it took place when it did,” he says.

The discovery, Shaw says, was a massive stroke of luck.

“We had no indication this would be a site of significance, and a lot of the time we were flying blind with the areas we surveyed, so it is very much like finding the proverbial needle in a haystack.”

But Shaw notes cooperation with local populations was key to the discovery, which is why the Brooker Island community is listed as a senior author on the paper.

“A lot of our good fortune was because of the cultural knowledge, and we built a strong relationship with the locals based on honesty and transparency about our research on their traditional lands,” he says. “Without their express permission, this kind of work would simply not be possible.”

Study Investigates Anglo-Saxon Diets

Study Investigates Anglo-Saxon Diets

Very few people in England ate large amounts of meat before the Vikings settled, and there is no evidence that elites ate more meat than other people, a major new bioarchaeological study suggests. Its sister study also argues that peasants occasionally hosted lavish meat feasts for their rulers. The findings overturn major assumptions about early medieval English history.

Food list compiled during the reign of King Ine of Wessex (c. 688-726), part of the Textus Roffensis
  • ‘You are what you eat’ isotopic analysis of over 2,000 skeletons is by far the largest of its kind.
  • Early medieval diets were far more similar across social groups than previously thought.
  • Peasants didn’t give kings food as exploitative tax, they hosted feasts suggesting they were granted more respect than previously assumed.
  • Surviving food lists are supplies for special feasts not blueprints for everyday elite diets.
  • Some feasts served up an estimated 1kg of meat and 4,000 Calories in total, per person.

Picture medieval England and royal feasts involving copious amounts of meat immediately spring to mind. Historians have long assumed that royals and nobles ate far more meat than the rest of the population and that free peasants were forced to hand over food to sustain their rulers throughout the year in an exploitative system known as feorm or food-rent.

But a pair of Cambridge co-authored studies published today in the journal Anglo-Saxon England present a very different picture, one which could transform our understanding of early medieval kingship and society.

While completing a PhD at the University of Cambridge, bioarchaeologist Sam Leggett gave a presentation which intrigued historian Tom Lambert (Sidney Sussex College). Now at the University of Edinburgh, Dr Leggett had analysed chemical signatures of diets preserved in the bones of 2,023 people buried in England from the 5th – to 11th centuries. She then cross-referenced these isotopic findings with evidence for social status such as grave goods, body position and grave orientation. Leggett’s research revealed no correlation between social status and high protein diets.

That surprised Tom Lambert because so many medieval texts and historical studies suggest that Anglo-Saxon elites did eat large quantities of meat. The pair started to work together to find out what was really going on.

They began by deciphering a food list compiled during the reign of King Ine of Wessex (c. 688-726) to estimate how much food it records and what its calorie content might have been. They estimated that the supplies amounted to 1.24 million kcal, over half of which came from animal protein. The list included 300 bread rolls so the researchers worked on the basis that one bun was served to each diner to calculate overall portions. Each guest would have received 4,140 kcal from 500g of mutton; 500g of beef; another 500g of salmon, eel and poultry; plus cheese, honey and ale.

The researchers studied ten other comparable food lists from southern England and discovered a remarkably similar pattern: a modest amount of bread, a huge amount of meat, a decent but not excessive quantity of ale, and no mention of vegetables (although some probably were served).

Lambert says: “The scale and proportions of these food lists strongly suggest that they were provisions for occasional grand feasts, and not general food supplies sustaining royal households on a daily basis. These were not blueprints for everyday elite diets as historians have assumed.”

“I’ve been to plenty of barbecues where friends have cooked ludicrous amounts of meat so we shouldn’t be too surprised. The guests probably ate the best bits and then leftovers might have been stewed up for later.”

Leggett says: “I’ve found no evidence of people eating anything like this much animal protein on a regular basis. If they were, we would find isotopic evidence of excess protein and signs of diseases like gout from the bones. But we’re just not finding that.”

“The isotopic evidence suggests that diets in this period were much more similar across social groups than we’ve been led to believe. We should imagine a wide range of people livening up bread with small quantities of meat and cheese, or eating pottages of leeks and whole grains with a little meat thrown in.”

The researchers believe that even royals would have eaten a cereal-based diet and that these occasional feasts would have been a treat for them too.

Peasants feeding kings

These feasts would have been lavish outdoor events at which whole oxen were roasted in huge pits, examples of which have been excavated in East Anglia.

Lambert says: “Historians generally assume that medieval feasts were exclusively for elites. But these food lists show that even if you allow for huge appetites, 300 or more people must have attended. That means that a lot of ordinary farmers must have been there, and this has big political implications.”

Kings in this period – including Rædwald, the early seventh-century East Anglian king perhaps buried at Sutton Hoo – are thought to have received renders of food, known in Old English as feorm or food-rent, from the free peasants of their kingdoms. It is often assumed that these were the primary source of food for royal households and that kings’ own lands played a minor supporting role at best. As kingdoms expanded, it has also been assumed that food-rent was redirected by royal grants to sustain a broader elite, making them even more influential over time.

But Lambert studied the use of the word feorm in different contexts, including aristocratic wills, and concludes that the term referred to a single feast and not this primitive form of tax. This is significant because food-rent required no personal involvement from a king or lord, and no show of respect to the peasants who were duty-bound to provide it. When kings and lords attended communal feasts in person, however, the dynamics would have been very different.

Lambert says: “We’re looking at kings travelling to massive barbecues hosted by free peasants, people who owned their own farms and sometimes slaves to work on them. You could compare it to a modern presidential campaign dinner in the US. This was a crucial form of political engagement.”

This rethinking could have far-reaching implications for medieval studies and English political history more generally. Food renders have informed theories about the beginnings of English kingship and land-based patronage politics, and are central to ongoing debates about what led to the subjection of England’s once-free peasantry.

Leggett and Lambert are now eagerly awaiting the publication of isotopic data from the Winchester Mortuary Chests which are thought to contain the remains of Egbert, Canute and other Anglo-Saxon royals. These results should provide unprecedented insights into the period’s most elite eating habits.

Ancient eggshell in the Northern Cape hiding 300,000 years of history

Ancient eggshell in the Northern Cape hiding 300,000 years of history

Evidence from an ancient eggshell has revealed important new information about the extreme climate change faced by human early ancestors.

The research shows parts of the interior of South Africa that today are dry and sparsely populated, were once wetland and grassland 250,000 to 350,000 years ago, at a key time in human evolution.

Philip Kiberd and Dr Alex Pryor, from the University of Exeter, studied isotopes and the amino acid from ostrich eggshell fragments excavated at the early Middle Stone Age site of Bundu Farm, in the upper Karoo region of the Northern Cape.

The yellow pin shows the location of Bundu Farm in the Northern Cape.

It is one of very few archaeological sites dated to 250,000 to 350,000 in southern Africa, a time period associated with the earliest appearance of communities with the genetic signatures of Homo sapiens.

This new research supports other evidence, from fossil animal bones, that past community in the region lived among grazing herds of wildebeest, zebra, small antelope, hippos, baboons and extinct species of Megalotragus Priscus and Equus capensis, and hunted these alongside other carnivores, hyena and lions.

After this period of equitable climate and environment, the eggshell evidence — and previous finds from the site — suggests that 200,000 years ago cooler and wetter climates gave way to increasing aridity.

A process of changing wet and dry climates recognised as driving the turnover and evolution of species, including Homo sapiens.

The study, published in the South African Archaeological Bulletin, shows that extracting isotopic data from ostrich eggshells, which are commonly found on archaeological sites in southern Africa, is a viable option for open-air sites greater than 200,000 years old.

The technique which involves grinding a small part of the eggshell, to a powder allows experts to analyse and date the shell, which in turn gives a fix on the climate and environment in the past.

A fragment of ancient ostrich shell embedded in calcrete from Bundu Farm.

Using eggshells to investigate past climates is possible as ostriches eat the freshest leaves of shrubs and grasses available in their environment, meaning eggshell composition reflects their diet.

As eggs are laid in the breeding season across a short window, the information found in ostrich eggshells provides a picture of the prevailing environment and climate for a precise period of time.

Bundu Farm, where the eggshell was recovered is a remote farm 50km from the nearest small town, sitting within a dry semi-desert environment, which supports a small flock of sheep.

The site was first excavated in the late 1990s the site with material stored at the McGregor Museum, Kimberley (MMK).

The study helps fill a gap in our knowledge of this part of South Africa and firmly puts the Bundu Farm site on the map.

Philip Kiberd, who led the study, said: “This part of South Africa is now extremely arid, but thousands of years ago it would have been an Eden-like landscape with lakes and rivers and abundant species of flora and fauna.

Our analysis of the ostrich eggshell helps us to better understand the environments in which our ancestors were evolving and provides an important context in which to interpret the behaviours and adaptations of people in the past and how this ultimately led to the evolution of our species.

Oldest Gynaecological Treatment On Record Performed In Ancient Egypt 4,000 Years Ago

Oldest Gynaecological Treatment On Record Performed In Ancient Egypt 4,000 Years Ago

In their latest research, scientists have come across a treatment practice in a mummy from 4000 years ago, as written in ancient Egyptian medical papyri. This treatment has been recorded as the first gynaecological treatment to date.

Oldest Gynaecological Treatment On Record Performed In Ancient Egypt 4,000 Years Ago

Scientists from the Universities of Granada and Jaén examined the physical evidence found in the mummified remains of a woman who suffered severe trauma in the pelvis and link them to a treatment described in Egyptian medical papyri of the time.

During the Qubbet al-Hawa Project, led by the University of Jaén (UJA) in Aswan (Egypt), in which scientists from the University of Granada (UGR) participated, researchers reported on a woman living in ancient Egypt who on a woman who died approximately in 1878-1797 BC and They found evidence of the oldest gynaecological treatment in the record.

During the 2017 archaeological excavations in Qubbet al-Hawa on the west bank of the Nile River, Andalusian researchers found a vertical shaft dug into the rock in tomb number QH34, which also opened the door to a burial chamber with ten sturdy skeletons.

Mummification techniques were not very effective in this region in upper Egypt. However, individuals buried there often belonged to the upper classes of society, which meant special attention should be paid to them. These particular mummies were wrapped in thick linen strips and very well preserved.

Professor Miguel Botella said, “mummies had grave gifts with different types of necklaces and masks on their faces, placed in two interlocking rectangular sarcophagi. It had hieroglyphic inscriptions, but it was badly damaged by the termite infestation. “she said.

Observed fracture in the groin.

One of the mummies excavated by the team of anthropologists was perhaps the last mummy buried in the room.

The remains of the outer coffin belonged to a high social class woman, whose name was Sattgen. This woman, named Sattgeni A, is a name widely used among the upper classes of the region, so it can be thought that an adverb is added.

The researchers found a ceramic bowl with signs of use, containing burnt organic debris, between her bandaged legs, in the lower part of the pelvis, and under the linen dressings.

Analysis of the skeletal remains was carried out by a team of anthropologists from the UGR (coordinated by Professor Botella) and confirmed that the woman had survived a severe fracture in her pelvis, possibly due to a fall that caused severe pain.

As written in medical papyri that describe the solutions for gynaecological problems, it is highly likely that the woman will be treated with fumigation to relieve these pains.

UJA Egyptologist and Qubbet al-Hawa Project manager Dr.  Alejandro Jimenez,” The most interesting feature of the discovery made by researchers from the University of Jaén is not only the documentation of palliative gynaecological treatment that is quite unique in Egyptian archaeology, but also that this type of fumigation therapy is defined in the contemporary medical literature.

But until now, no evidence could not be found to prove that such a treatment was actually applied” saying he expressed the importance of the research conducted.

During the demolition work, a 2,500-year-old bull heads alto relievo was discovered in Sinop

During the demolition work, a 2,500-year-old bull heads alto relievo was discovered in Sinop

During the demolition work of the buildings in front of the historical city walls for the City Square National Garden project in the province of Sinop on the Black Sea coast of Turkey, 2,500-year-old bull heads shaped alto-relievo were found.

During the demolition work, a 2,500-year-old bull heads alto relievo was discovered in Sinop

According to the news of Gökhan Güçlüoğlu from Anadolu Agency, the demolition of the buildings in front of the historical city walls continues within the scope of the City Square Nation Garden Project implemented by the Ministry of Environment, Urbanization and Climate Change in the Sinop.

Within the framework of the demolitions that started on December 16, 2021, the demolition of five buildings, including the service building of Sinop Municipality, has been completed so far.

With the demolition of the structures within the scope of the project, which aims to bring the historical castle walls to tourism, a 2,500-year-old bullhead alto-relievo embroidered on the castle wall was also unearthed.

It is estimated that the relief carved on the castle wall consisting of four bullheads was designed as a symbol of power in ancient times.

What is the alto-relievo?

Relief, also called relievo, in sculpture, is any work in which the figures project from a supporting background, usually a plane surface.

Reliefs are classified according to the height of the figures’ projection or detachment from the background.

In a high relief, or alto-relievo, the forms project at least half or more of their natural circumference from the background and may in parts be completely disengaged from the ground, thus approximating sculpture in the round.